RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00312 U1A-UTRRNA, NMR, 31 STRUCTURES Other rRNA HOMO SAPIENS RCSB Protein Data Bank 1AUD 30 PDB_00313 E. COLI CYSTEINYL-TRNA AND T. AQUATICUS ELONGATION FACTOR EF-TU:GTP TERNARY COMPLEX tRNA ESCHERICHIA COLI RCSB Protein Data Bank 1B23 74 PDB_00317 BOVINE IMMUNODEFICIENCY VIRUS TAT-TAR COMPLEX, NMR, 5 STRUCTURES Synthetic RNA BOVINE IMMUNODEFICIENCY VIRUS RCSB Protein Data Bank 1BIV 28 PDB_00326 IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM Other rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1C04 87 PDB_00327 CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 1C0A 79 PDB_00335 HEPATITIS DELTA VIRUS RIBOZYME Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1CX0 72 PDB_00337 SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1D0U 21 PDB_00339 NMR SOLUTION STRUCTURE OF THE 5S RRNA E-LOOP/L25 COMPLEX 5S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1D6K 37 PDB_00340 MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1DDY 140 PDB_00341 CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUT Other rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1DFU 38

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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