RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00663 CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QCU 44 PDB_00682 CRYSTAL STRUCTURE OF THE FIRST RNA DUPLEX IN L-CONFORMATION AT 1.9A RESOLUTION Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1R3O 32 PDB_00683 NMR SOLUTION STRUCTURE OF THE IIIC DOMAIN OF GB VIRUS B IRES ELEMENT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1R4H 10 PDB_00686 CRYSTAL STRUCTURE OF P19 COMPLEXED WITH 19-BP SMALL INTERFERING RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1R9F 38 PDB_00687 ATP BINDING RNA APTAMER IN COMPLEX WITH AMP, NMR, 10 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RAW 36 PDB_00688 CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.15 ANGS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RC7 40 PDB_00698 CRYSTAL STRUCTURE OF CIRV P19 BOUND TO SIRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RPU 42 PDB_00701 STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME Synthetic RNA TURSIOPS TRUNCATUS RCSB Protein Data Bank 1RY1 302 PDB_00705 AVERAGE SOLUTION STRUCTURE OF A PSEUDO-5'-SPLICE SITE FROM THE NEGATIVE REGULATOR OF SPLICING OF ROU Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1S2F 23 PDB_00706 SOLUTION STRUCTURE OF RESIDUES 907-929 FROM ROUS SARCOMA VIRUS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1S34 23

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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