RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00750 CRYSTAL STRUCTURE OF THE SPECIFICITY DOMAIN OF RIBONUCLEASE P OF THE A-TYPE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1U9S 155 PDB_00751 RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES Synthetic RNA HUMAN IMMUNODEFICIENCY VIRUS 1 RCSB Protein Data Bank 1ULL 35 PDB_00753 REOVIRUS POLYMERASE LAMBDA-3 LOCALIZED BY ELECTRON CRYOMICROSCOPY OF VIRIONS AT 7.6-A RESOLUTION Synthetic RNA Unknown RCSB Protein Data Bank 1UON 16 PDB_00754 U1A MUTANT/RNA COMPLEX + GLYCEROL Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1URN 55 PDB_00757 NMR STRUCTURE OF A SYNTHETIC SMALL MOLECULE, RBT158, BOUND TO HIV-1 TAR RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1UUI 29 PDB_00759 THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1UVN 18 PDB_00798 SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WKS 17 PDB_00799 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WNE 13 PDB_00800 C-TERMINAL DOMAIN OF ELONGATION FACTOR SELB COMPLEXED WITH SECIS RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WSU 65 PDB_00803 HIV-1 DIS(MAL) DUPLEX COCL2-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WVD 46

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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